PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_FDED400C4.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 793aa    MW: 89522.4 Da    PI: 8.7188
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_FDED400C4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.71.6e-1733116190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C a+++vk++ d+  +v+  +l+HnH+
  Traes_6DL_FDED400C4.1  33 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPARIRVKLWGDKLLHVELANLDHNHP 114
                            5*****************9999.6677****************9988.....99*********************************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_6DL_FDED400C4.1 115 VS 116
                            87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1533117IPR004330FAR1 DNA binding domain
PfamPF105511.1E-28237330IPR018289MULE transposase domain
PROSITE profilePS509669.31523559IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5527555IPR007527Zinc finger, SWIM-type
SMARTSM005755.7E-6534561IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MENIDPYLEE SDGQDIGIPE VGMVFNNHME VNRFYRRYAR RVGFGVSVRR SSFSQEGTCL  60
YLELMCCKGG RPRYEPKFRK RASSTTNCPA RIRVKLWGDK LLHVELANLD HNHPVSPAMA  120
RFLNSYKQLS GPAKRRLRMG GPGAMPVEEP SKMPVDKLGA LEELLFGESK NHKFVERGRL  180
KLQPGDSEAL RLFFTRMQAK NANFFNVIDL DDEGCVRNVF WADAWSRAMY EYYNDAITLD  240
TSYVVSKHDM PLVTFLGVNH HGQSVLLGCG LLSDETAETY TWLFKAWVAC MSGNLPKAII  300
TDQCRGIQSA VAEVVPGVRH RICLHQIMKK AADQLSGLSE YKAISKALQK AAYDSLTVDE  360
FEGEWSTLIT YNGLQGHDWL RSLYECRFSW VPIFLKDAFW AGMSATQRSE TITPFFEGYV  420
DLKTSLKQFL GKYVMILQSK YEKEAQADFE TFHKQRPPVS KFYMEEQLSN VYTHNMFKKF  480
QDEIEAIMYC HVSLMNGDGP ISTFNVKECI FLEDGKRTMS KIFAVTYNTE EKDITCICGG  540
FQFSGILCRH SLSVLKFQQV REVPSQYVLD RWKKDFRQLH VMGRLSSDVV PDNRVDRYDY  600
LSMRCLQLVD SAVLSDKYRL ALRLVREVEK FLLNSNTHDD TQPRIKSRIP KVKPNTVTGQ  660
NLVNVVTDNG NGGPKGPEAS ASAQASQIQK GVAEKAVVPA GYIGVPANVQ QFMGNQAAMR  720
PSIVYMVPSG VDPQAFGNGV LMPVMYQQMF QIPQQPNGAA QDTLANGKRK RPRAQKPTET  780
SHQSNGTSGP AAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757560.0AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575325.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5H1560.0W5H156_WHEAT; Uncharacterized protein
STRINGMLOC_3334.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-133FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]